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Supplementary Table statistics on gene overlaps of tunicate mitochondrial genomes


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Supplementary Table S6. Statistics on gene overlaps of tunicate mitochondrial genomes. Newly sequenced mt genomes are reported in bold. Aplouso = Aplousobranchia; Phlebo = Phlebobranchia; Stolido = Stolidobranchia; Thalia = Thaliacea. tot. bp = total length of the gene overlap; tot% = percentage in length of the overlapping regions; N° = number of overlapping regions; Max = length of the longest overlapping region; cox2-cob block = length of the overlap between the cox2 and cob genes.









Species

tot bps

tot%



Max

Location of max overlap

cox2-cob block

(bp overl.)

Aplouso.

Clavelinidae

Clavelina lepadiformis

7

0.05

2

5

nad2 / trnN

no

Aplouso.

Didemnidae

Diplosoma listerianum

122

0.89

15

21

trnE / nad4L

no

Aplouso.

Polyclinidae

Aplidium conicum

4

0.03

2

3

trnM(UAU) / trnS(UCN)

no

Phlebo.

Ascidiidae

Ascidiella aspersa a

18

0.10

4

14

trnP-2 / trnI

no

Phlebo.

Ascidiidae

Phallusia fumigata

23

0.15

3

14

cox2 / cob; nad1 / nad2

yes (14)

Phlebo.

Ascidiidae

Phallusia mammillata

44

0.30

6

14

cox2 / cob

yes (14)

Phlebo.

Cionidae

Ciona intestinalis sp. A

37

0.25

3

26

cox2 / cob

yes (26)

Phlebo.

Cionidae

Ciona intestinalis sp. B

38

0.26

3

29

cox2 / cob

yes (29)

Phlebo.

Cionidae

Ciona savignyi

33

0.22

3

26

cox2 / cob

yes (26)

Phlebo.

Corellidae

Rhodosoma turcicum

10

0.07

4

4

trnT / trnN; trnN / trnI

no

Stolido.

Pyuridae

Halocynthia roretzi

24

0.16

2

13

nad4L / trnM(CAU)

yes (11)

Stolido.

Pyuridae

Halocynthia spinosa

8

0.05

2

7

nad4L / trnM(CAU)

no

Stolido.

Pyuridae

Herdmania momus

31

0.20

4

16

nad4L/ trnL(UUR)

no

Stolido.

Pyuridae

Microcosmus sulcatus

65

0.43

4

44

nad4L / cox1

yes (11)

Stolido.

Pyuridae

Pyura gangelion

14

0.10

2

11

cox2 / cob

yes (11)

Stolido.

Styelidae

Botrylloides aff. leachii

15

0.10

4

11

cox2 / cob

yes (11)

Stolido.

Styelidae

Polycarpa mytiligera

14

0.10

3

11

cox2 / cob

yes (11)

Stolido.

Styelidae

Styela plicata

6

0.04

5

2

trnG(AGR) / trnE

no

Thalia.

Doliolida

Doliolum nationalis

45

0.28

7

17

cox2 / cob

yes (17)


aThe two URFs and the two extra tRNAs were considered as genes.




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