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Appendix 2 The smallest avian genomes are found in hummingbirds


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APPENDIX 2

The smallest avian genomes are found in hummingbirds

T.R. Gregory, C.B. Andrews, J.A. McGuire, and C.C. Witt



Table S2. Tissue samples used for molecular phylogenetic analysis, with Museum catalog numbers and Genbank numbers for previously published sequences. Museums include the Louisiana State University Museum of Natural Science (LSUMZ) and the University of Copenhagen Museum of Zoology (ZMUC). Loci include NADH-dehydrogenase subunit 2 (ND2), NADH-dehydrogenase subunit 4 (ND4), Beta-fibrinogen intron 7 (BFib7), and Adenylate Kinase 1 intron 5 (AK1).

Species

Museum

Catalogue No.

ND2

ND4

BFib7

AK1

Locality

Adelomyia melanogenys

LSUMZ

B-8025

AY830457

EU042274

AY830608

AY830533

Peru, Pasco Department.

Aglaiocercus kingi

LSUMZ

B-8017

AY830461

EU042278

AY830612

AY830537

Peru, Pasco Department.

Amazilia amazilia

LSUMZ

B-14263

This study

This study

This study

This study

Peru.

Amazilia lactea

LSUMZ

B-9484

This study

This study

This study

This study

Bolivia, Pando Department.

Anthracothorax nigricollis

LSUMZ

B-9652

EU042527

EU042207

EU042363

EU042445

Bolivia, Pando Department.

Archilochus alexandri

LSUMZ

B-21848

EU042529

EU042209

EU042365

EU042447

USA, Texas.

Campylopterus largipennis

LSUMZ

B-4474

AY830467

EU042285

AY830618

AY830543

Peru, Loreto Department.

Caprimulgus longirostris

LSUMZ

B-32361

EU042515

EU042195

EU042351

EU042433

Peru, Cajamarca Department.

Chalcostigma herrani

LSUMZ

B-6277

EU042536

EU042216

EU042372

EU042454

Ecuador, Pichincha Province.

Chrysuronia oenone

LSUMZ

B-5381

AY830472

EU042291

AY830623

AY830548

Peru, San Martin Department.

Coeligena iris

LSUMZ

B-31770

This study

This study

This study

This study

Peru, Cajamarca Department.

Colibri coruscans

LSUMZ

B-6310

AY830476

EU042295

AY830627

This study

Ecuador, Pichincha Province.

Colibri thalassinus

LSUMZ

B-28263

EU042544

EU042224

EU042380

EU042462

Panama, Chiriquí Province.

Eutoxeres condamini

LSUMZ

B-8094

AY830484

EU042305

AY830635

AY830559

Peru, Pasco Department.

Florisuga mellivora

LSUMZ

B-9646

AY830485

EU042306

AY830636

AY830560

Bolivia, Pando Department.

Glaucis hirsutus

LSUMZ

B-28468

AY830486

EU042307

AY830637

AY830561

Panama, Colon Province.

Heliangelus micraster

LSUMZ

B-34698

EU042556

EU042236

EU042392

EU042472

Peru, Cajamarca Department.

Heliodoxa leadbeateri

LSUMZ

B-6036

AY830492

EU042314

AY830643

AY830567

Ecuador, Morona-Santiago Province.

Lafresnaya lafresnayi

LSUMZ

B-32771

AY830496

EU042318

AY830647

AY830571

Peru, Cajamarca Department.

Lesbia nuna

LSUMZ

B-3615

AY830498

EU042320

AY830649

AY830573

Peru, Huanuco Department.

Lesbia victoriae

ZMC

113657

AY830499

This study

AY830650

AY830574

Ecuador, Pichincha Province.

Metallura phoebe

LSUMZ

B-103876

EU042569

EU042249

EU042404

EU042484

Peru, Arequipa Department.

Metallura tyrianthina

LSUMZ

B-6272

AY830502

EU042323

AY830653

AY830577

Ecuador, Pichincha Province.

Ocreatus underwoodi

LSUMZ

B-22594

AY830504

EU042324

AY830655

AY830579

Bolivia, La Paz Department.

Oreotrochilus estella

LSUMZ

B-103835

AY830507

EU042327

AY830658

AY830582

Peru, Ayacucho Department.

Oreotrochilus melanogaster

LSUMZ

B-2077

This study

This study

This study

This study

Peru, Lima Department.

Patagona gigas

LSUMZ

B-7903

AY830510

EU042330

AY830661

AY830585

Ecuador, Pichincha Province.

Phaethornis guy

LSUMZ

B-35966

AY830511

EU042331

AY830662

AY830586

Trinidad, Caroni County.

Phaethornis hispidus

LSUMZ

B-10629

AY830512

EU042332

AY830663

AY830587

Peru, Ucayali Department.

Phaethornis malaris

LSUMZ

B-27511

AY830514

EU042334

AY830665

AY830589

Peru, Loreto Department.

Phaethornis ruber

LSUMZ

B-9481

AY830515

EU042335

AY830666

AY830590

Bolivia, Pando Department.

Polyonymus caroli

LSUMZ

B-15503

This study

This study

This study

This study

Peru.

Pterophanes cyanopterus

LSUMZ

B-1296

AY830520

EU042337

AY830671

AY830595

Bolivia, La Paz Department.

Schistes geoffroyi

LSUMZ

B-6300

AY830521

EU042338

AY830672

AY830596

Ecuador, Pichincha Province.

Taphrospilus hypostictus

LSUMZ

B-5465

AY830523

EU042340

AY830674

AY830598

Peru, San Martin Department.

Thalurania furcata

LSUMZ

B-4756

This study

This study

This study

This study

Peru, Loreto Department.

Thaumastura cora

LSUMZ

B-14278

This study

This study

This study

This study

Peru.

Threnetes leucurus

LSUMZ

B-2673

AY830526

EU042343

AY830677

AY830601

Peru, Loreto Department.


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